Protein Details: Voltage-gated sodium channel subunit alpha Nav1.7

Protein ID

ICDB_Pro_0884

Protein Name

Voltage-gated sodium channel subunit alpha Nav1.7

Gene Name

SCN9A

Organism

Oryctolagus cuniculus (Rabbit)

Length

1984 amino acids

AlphaFoldDB

AF-Q28644-F1-model_v4.pdb

Function

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane; the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms; especially in the development of inflammatory pain.

Sequence

MAMLPPPGPQSFVRFTKQSLALIEQRIAEGKTKEPKEEKKDDHDEGPKPSSDLEAGKQLPFIYGDIPAGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYILSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMNNPAEWTKNVEYTFTGIYTFESLVKIFARGFCVGEFTFLRDPWNWLDFIVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVIILTVFCLSVFALIGLQLFMGHLKHKCLRKIENETLESIMSSIESEEDYKKYFYYLEGSKDALLCGFSTDSGQCPEGYYCVKAGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKELEFQQMLDRLKKEQEEAEAIAAAAAEYTSIGRSRIMGLSESSSETSKLSSKSAKERRNRRKKKNQKKLSSGEEKGDDEKLSKSESEESISRKQFHLGVEGHRLAREKRLSAPNQSPLSIRGSLFSARRSSRTSLFSFKGRGKDIGSETEFADDEHSIFGDNESRRGSLFVPQRPQERRSSNLSQASRSPPMLQMNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTTQIRKKRRSSSYLLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPSWWYRFAHTFLIWNCSPFWIKFKKFIYIIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLVVGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNVFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGPLGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINDDCSLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLNLFLALLLSSFSSDNLSAIEEDTDANNLQIAVTRIKKGINYVKQTLRELILKAFSKKPKISKEIRQAEDLNSKKENYISNRTLAEMSKDYNFHKEKDKISGFGSSMDKYLMEESDHQSFIHNPSLTVTVPIAPGESDLENMNTEELSSDSESEYSKERLNRSSSSECSTVDNALPGEGEEAEAEPVNSDEPEACFTDGCVRRFPCCQVSIESGKGKIWWNIRKTCYRIVEHSWFESFIVLMILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYQCVNTTDDSRFPTKQVSNRSECFALMNGSQNVRWKNLKVNFDNVGLRYLSLLQVATFKGWMDIMYAAVDSVNVDQQPSYEHNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGCIFDLVTNQAFDITIMILICLNMVTMMVEKEGQSDYMTDVLYWINVVFIILFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIETYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSTEGDCGSPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLRQNVKNISSIYIKEGDKDDDLPNKGDIVFDNVNSSSPEKTDATASTISPPSYDSVTKPDKEKYEKDKTEKEDKGKDGKETKK

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

819;824

Disease

Location

Expressed in the sciatic nerve; spinal cord; brainstem; cerebellum and cortex; but not expressed in the lung; skeletal and cardiac muscles; kidney and liver

DOI ID

10.1073/pnas.92.24.11034

RefSeq

NP_001075827.1 [Q28644-1]

Feature